PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000061.1_g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 190aa    MW: 21828.9 Da    PI: 6.2258
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000061.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123254123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y C +C++ F++   L  H++ H
  Itr_sc000061.1_g00021.1 32 YDCVYCKRGFNTAQALGGHMNIH 54
                             88*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.28E-63059No hitNo description
PfamPF139128.9E-63256IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8033259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MRQKMESIIN YSPENQEPER PEHDLAGIGR SYDCVYCKRG FNTAQALGGH MNIHRKDRAA  60
RNPKPNDNLN NDETSFNPNK PAGGRENNNN NFYTTLNVPM FFHHQVSAPP PSQMSYQTHF  120
PATTSGPVFS DHRYYRYNAL GCDDGDGNNN PQCLNLFEND WRLSLRHVDD VVEKIDDSVD  180
LELRLGHDYR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.18e-13C2H2 family protein